Links

Research Tools and Databases
 

Melting Temperature Calculation for Designing Primers: http://insilico.ehu.es/tm.php


Primer design for QuikChange Site-Directed Mutagenesis: http://depts.washington.edu/bakerpg/primertemp/primertemp.html

NCBI : http://www.ncbi.nlm.nih.gov/


Codon Usage Database: http://www.kazusa.or.jp/codon/


Restriction site generator: http://www.utmb.edu/scccb/software/sitefind.html


DNAWorks: http://helixweb.nih.gov/dnaworks/


Align Sequences Nucleotide Blast:

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&PROG_DEF=blastn&BLAST_PROG_DEF=megaBlast&BLAST_SPEC=blast2seq


ExPASy Proteomics: http://us.expasy.org/


ExPASy Compute pI Mw tool: http://ca.expasy.org/tools/pi_tool.html


RCSB Protein Data Bank: http://www.pdb.org/pdb/home/home.do


GPCRDB: Information System for GPCR: http://www.gpcr.org/7tm/


Cytochrome P450 Homepage: http://drnelson.uthsc.edu/CytochromeP450.html


STRING - Known and Predicted Protein-Protein Interactions: http://string.embl.de/newstring_cgi/show_input_page.pl


Aminoacyl-tRNA Synthetases Database: http://biobases.ibch.poznan.pl/aars/


Drugs under Clinical trials: http://www.clinicaltrials.gov/


Mabs Approved: http://www.antibodysociety.org/news/approved_mabs.php


IMGT: http://www.imgt.org/


Kabat database: http://www.kabatdatabase.com/index.html


AntibodyResource: http://www.antibodyresource.com/


Humanization by Design: http://people.cryst.bbk.ac.uk/~ubcg07s/


IgBLAST: http://www.ncbi.nlm.nih.gov/igblast/


Colibri: http://genolist.pasteur.fr/Colibri/


CyberCell Database: http://ccdb.wishartlab.com/CCDB/


E. coli Genotypes: http://openwetware.org/wiki/E._coli_genotypes


coliBASE: http://www.xbase.ac.uk/colibase/


E. coli Genetic Resources at Yale CGSC: http://cgsc.biology.yale.edu/index.php


ATCC: The Global Bioresource Center: http://www.atcc.org/


DSMZ - German Collection of Microorganisms and Cell Culture: http://www.dsmz.de/


Phage-Display Vectors and Libraries Based on Filamentous Phage Strain fd-tet:

ClusPro 2.0 protein-protein docking: http://cluspro.bu.edu/queue.php


Docking sites: http://www.imb-jena.de/~rake/Bioinformatics_WEB/dd_tools.html


DSDBASE Home Page: http://caps.ncbs.res.in/dsdbase/dsdbase.html


GRAMM-X Protein-Protein Docking Web Server: http://vakser.bioinformatics.ku.edu/resources/gramm/grammx/


Hex Protein Docking Server: http://www.loria.fr/~ritchied/hex_server/


Accelrys Discovery Studio: http://accelrys.com/products/discovery-studio/


Multiple sequence alignment STRAP: http://www.bioinformatics.org/strap/


ZDOCK Server An automatic protein docking server: http://zdock.bu.edu/


ZINC - A free database for virtual screening - version 8: http://zinc.docking.org/choose.shtml


WebLogo: http://weblogo.berkeley.edu/


Biodit: http://www.mbio.ncsu.edu/bioedit/bioedit.html


NEBcutter V2.0: http://tools.neb.com/NEBcutter2/


WinMDI: http://facs.scripps.edu/software.html


RNAStructure: http://en.bio-soft.net/rna/RNAstructure.html


Biocompare: http://www.biocompare.com/


 

Research Groups
 

George Georgiou (University of Texas at Austin): http://www.che.utexas.edu/georgiou/index.html

Frances H. Arnold (Caltech): http://www.che.caltech.edu/groups/fha/index.html

K. Dane Wittrup (MIT): http://web.mit.edu/kdw-lab/

Andreas Plückthun (University of Zurich): http://www.bioc.uzh.ch/plueckthun/

Jim Wells (University of California at San Francisco): http://wellslab.ucsf.edu/about/labmemb.htm

David Tirrel (Caltech): http://tirrell-lab.caltech.edu/

Mark M. Davis (Stanford University): http://www.stanford.edu/group/davislab/

Jeffrey V. Ravetch (Rockefeller University): http://lab.rockefeller.edu/ravetch/

Stephen Quake (Stanford University): http://thebigone.stanford.edu/

Jon Beckwith (Harvard University): http://beck2.med.harvard.edu/

Mattew P. DeLisa (Cornell): http://www.cbe.cornell.edu/~md255/DLRG/MPD.html

Patrick Daugherty (University of California at Santa Barbara):

Tom Soh (University of California at Santa Barbara): http://www.engr.ucsb.edu/sohlab/index.html

A. James Link (Princeton University): http://www.princeton.edu/~ajlgroup/

Karl Griswold (Dartmouth University): http://engineering.dartmouth.edu/griswold/

Christopher A. Voigt (MIT): http://mit.edu/voigtlab/

Jay D. Keasling (University of California at Berkeley): http://keaslinglab.lbl.gov/